Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm24644-201ENSMUST00000157114 139 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm22331-201ENSMUST00000158066 136 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm29649-201ENSMUST00000185649 419 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm45841-201ENSMUST00000207700 164 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cpsf3Q9QXK7 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gm29127-201ENSMUST00000188304 517 ntBASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gm44069-201ENSMUST00000204898 506 ntBASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cpsf3Q9QXK7 Gm15222-202ENSMUST00000228667 1726 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm12203-201ENSMUST00000118235 598 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm15824-201ENSMUST00000119516 955 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm12209-201ENSMUST00000120089 596 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Gm16372-201ENSMUST00000073088 450 ntBASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cpsf3Q9QXK7 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 76.7 ms