Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Gm8738-201ENSMUST00000172606 329 ntBASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usp40Q8BWR4 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm4986-201ENSMUST00000119731 549 ntBASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm4857-201ENSMUST00000192718 785 ntBASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm38297-201ENSMUST00000195122 1057 ntBASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm7118-201ENSMUST00000200167 1003 ntBASIC18.17■□□□□ 0.5
Usp40Q8BWR4 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Gm5781-201ENSMUST00000219792 443 ntBASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Usp40Q8BWR4 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Gm24255-201ENSMUST00000104481 128 ntBASIC18.16■□□□□ 0.5
Usp40Q8BWR4 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Gm37489-201ENSMUST00000191883 159 ntBASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 CT009713.10-201ENSMUST00000225013 1986 ntBASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Usp40Q8BWR4 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Gm13316-201ENSMUST00000140537 691 ntBASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Gm22121-201ENSMUST00000175148 54 ntBASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 AC069562.3-201ENSMUST00000225387 587 ntBASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp40Q8BWR4 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms