Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm11930-201ENSMUST00000117788 190 ntBASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm7857-201ENSMUST00000117957 358 ntBASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.08■□□□□ 0
Ddx55Q6ZPL9 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ddx55Q6ZPL9 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm12217-201ENSMUST00000118858 696 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm13665-201ENSMUST00000120830 528 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm14277-201ENSMUST00000121195 360 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm5597-201ENSMUST00000182353 1193 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm8885-201ENSMUST00000189382 598 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ddx55Q6ZPL9 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ddx55Q6ZPL9 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms