Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Usf1Q61069 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.1□□□□□ -0.47
Usf1Q61069 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC12.1□□□□□ -0.47
Usf1Q61069 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.1□□□□□ -0.47
Usf1Q61069 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.1□□□□□ -0.47
Usf1Q61069 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC12.1□□□□□ -0.47
Usf1Q61069 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC12.1□□□□□ -0.47
Usf1Q61069 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.1□□□□□ -0.47
Usf1Q61069 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.1□□□□□ -0.47
Usf1Q61069 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC12.1□□□□□ -0.47
Usf1Q61069 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.1□□□□□ -0.47
Usf1Q61069 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.1□□□□□ -0.47
Usf1Q61069 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Usf1Q61069 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Usf1Q61069 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.09□□□□□ -0.47
Usf1Q61069 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.09□□□□□ -0.47
Usf1Q61069 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Gm4909-201ENSMUST00000118749 794 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC12.09□□□□□ -0.47
Usf1Q61069 B9d1os-201ENSMUST00000137010 674 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 Gm13316-201ENSMUST00000140537 691 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.09□□□□□ -0.47
Usf1Q61069 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC12.09□□□□□ -0.47
Usf1Q61069 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.09□□□□□ -0.47
Usf1Q61069 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Usf1Q61069 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Usf1Q61069 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC12.09□□□□□ -0.47
Usf1Q61069 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Usf1Q61069 Gm45546-201ENSMUST00000211053 2394 ntBASIC12.08□□□□□ -0.47
Usf1Q61069 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.47
Usf1Q61069 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Usf1Q61069 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Usf1Q61069 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC12.08□□□□□ -0.48
Usf1Q61069 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Usf1Q61069 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Usf1Q61069 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Usf1Q61069 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.08□□□□□ -0.48
Usf1Q61069 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms