Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Upf3aQ3ULJ3 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm20482-202ENSMUST00000174729 825 ntBASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm9176-201ENSMUST00000219955 1120 ntBASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Morn2-202ENSMUST00000227729 656 ntBASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Gm44207-201ENSMUST00000204568 1424 ntBASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Upf3aQ3ULJ3 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm15897-201ENSMUST00000117770 1486 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm11964-201ENSMUST00000120982 444 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm25668-201ENSMUST00000157700 129 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm16570-201ENSMUST00000161951 436 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 AC135669.1-202ENSMUST00000216742 540 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.96□□□□□ -0.17
Upf3aQ3ULJ3 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Gm7993-201ENSMUST00000200970 1384 ntBASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Upf3aQ3ULJ3 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Gm11222-201ENSMUST00000119005 738 ntBASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Gm6082-201ENSMUST00000215204 454 ntBASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.95□□□□□ -0.18
Upf3aQ3ULJ3 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms