Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm14127-201ENSMUST00000117906 678 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm14767-201ENSMUST00000121559 586 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm14719-201ENSMUST00000121891 340 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm18766-201ENSMUST00000189811 808 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col28a1Q2UY11 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.97□□□□□ -0.33
Col28a1Q2UY11 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Gm45453-201ENSMUST00000211758 853 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Gm7653-201ENSMUST00000214567 508 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Mir497b-201ENSMUST00000093601 125 ntBASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col28a1Q2UY11 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col28a1Q2UY11 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col28a1Q2UY11 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms