Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 AC165260.2-203ENSMUST00000224237 336 ntBASIC19.97■□□□□ 0.79
Col17a1Q07563 CT573086.4-201ENSMUST00000226729 342 ntBASIC19.97■□□□□ 0.79
Col17a1Q07563 AC121357.1-201ENSMUST00000227365 608 ntBASIC19.97■□□□□ 0.79
Col17a1Q07563 Gm7536-201ENSMUST00000077389 444 ntBASIC19.97■□□□□ 0.79
Col17a1Q07563 Gm5453-201ENSMUST00000080866 447 ntBASIC19.97■□□□□ 0.79
Col17a1Q07563 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Col17a1Q07563 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col17a1Q07563 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Col17a1Q07563 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC19.96■□□□□ 0.79
Col17a1Q07563 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC19.96■□□□□ 0.79
Col17a1Q07563 Gm44647-201ENSMUST00000207402 428 ntBASIC19.96■□□□□ 0.79
Col17a1Q07563 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Col17a1Q07563 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col17a1Q07563 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Poc1a-209ENSMUST00000216228 1431 ntTSL 5 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Gm44981-201ENSMUST00000205549 1943 ntBASIC19.95■□□□□ 0.78
Col17a1Q07563 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC19.95■□□□□ 0.78
Col17a1Q07563 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
Col17a1Q07563 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Gm807-202ENSMUST00000224929 408 ntBASIC19.95■□□□□ 0.78
Col17a1Q07563 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC19.95■□□□□ 0.78
Col17a1Q07563 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col17a1Q07563 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Col17a1Q07563 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC19.94■□□□□ 0.78
Col17a1Q07563 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Col17a1Q07563 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Gm9916-201ENSMUST00000192943 1228 ntBASIC19.94■□□□□ 0.78
Col17a1Q07563 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 AC138716.2-201ENSMUST00000226670 1016 ntBASIC19.94■□□□□ 0.78
Col17a1Q07563 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Gm5805-201ENSMUST00000072779 456 ntBASIC19.94■□□□□ 0.78
Col17a1Q07563 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Col17a1Q07563 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Col17a1Q07563 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col17a1Q07563 Gm24791-201ENSMUST00000104284 131 ntBASIC19.93■□□□□ 0.78
Col17a1Q07563 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm15352-201ENSMUST00000118696 270 ntBASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm8737-201ENSMUST00000122208 642 ntBASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC19.93■□□□□ 0.78
Col17a1Q07563 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm43186-201ENSMUST00000198130 824 ntBASIC19.93■□□□□ 0.78
Col17a1Q07563 Gm2965-201ENSMUST00000198365 343 ntBASIC19.93■□□□□ 0.78
Col17a1Q07563 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC19.93■□□□□ 0.78
Col17a1Q07563 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col17a1Q07563 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms