Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col8a1Q00780 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col8a1Q00780 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC11.37□□□□□ -0.59
Col8a1Q00780 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
Col8a1Q00780 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.37□□□□□ -0.59
Col8a1Q00780 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.37□□□□□ -0.59
Col8a1Q00780 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.37□□□□□ -0.59
Col8a1Q00780 Mospd4-201ENSMUST00000180618 576 ntBASIC11.37□□□□□ -0.59
Col8a1Q00780 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.37□□□□□ -0.59
Col8a1Q00780 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm21769-201ENSMUST00000211922 111 ntBASIC11.37□□□□□ -0.59
Col8a1Q00780 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm9826-201ENSMUST00000029124 1299 ntBASIC11.37□□□□□ -0.59
Col8a1Q00780 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Col8a1Q00780 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gm21451-201ENSMUST00000111062 2775 ntBASIC11.37□□□□□ -0.59
Col8a1Q00780 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Col8a1Q00780 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm43205-201ENSMUST00000198622 1968 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Col8a1Q00780 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm11591-201ENSMUST00000120063 702 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm12566-201ENSMUST00000121479 359 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm14017-201ENSMUST00000121934 386 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm7809-201ENSMUST00000153199 742 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm2260-201ENSMUST00000184965 657 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm8099-201ENSMUST00000200510 742 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC11.36□□□□□ -0.59
Col8a1Q00780 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.36□□□□□ -0.59
Col8a1Q00780 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC11.36□□□□□ -0.59
Col8a1Q00780 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.36□□□□□ -0.59
Col8a1Q00780 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Col8a1Q00780 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC11.35□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms