Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Sdc1P18828 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Gm43045-201ENSMUST00000198725 2095 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Gm27920-201ENSMUST00000183953 96 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC10.88□□□□□ -0.67
Sdc1P18828 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Gm6443-201ENSMUST00000203599 874 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC10.88□□□□□ -0.67
Sdc1P18828 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Gm3052-202ENSMUST00000188254 2224 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Daam2-202ENSMUST00000224595 1926 ntBASIC10.88□□□□□ -0.67
Sdc1P18828 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC10.88□□□□□ -0.67
Sdc1P18828 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Sdc1P18828 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC10.87□□□□□ -0.67
Sdc1P18828 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC10.87□□□□□ -0.67
Sdc1P18828 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
Sdc1P18828 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 AC122840.1-201ENSMUST00000220915 3334 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 AC124751.1-201ENSMUST00000222716 1408 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
Sdc1P18828 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Gm45484-201ENSMUST00000210310 1141 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 Gm18934-201ENSMUST00000216671 1044 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 Gm18636-201ENSMUST00000218846 1066 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC10.87□□□□□ -0.67
Sdc1P18828 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 AC122860.2-201ENSMUST00000217967 2671 ntBASIC10.87□□□□□ -0.67
Sdc1P18828 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Sdc1P18828 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms