Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Lire1P11260 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Lire1P11260 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.7□□□□□ -0.38
Lire1P11260 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.7□□□□□ -0.38
Lire1P11260 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Lire1P11260 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC12.7□□□□□ -0.38
Lire1P11260 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Lire1P11260 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC12.7□□□□□ -0.38
Lire1P11260 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.7□□□□□ -0.38
Lire1P11260 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Gm20445-201ENSMUST00000061905 565 ntBASIC12.7□□□□□ -0.38
Lire1P11260 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Gm6159-201ENSMUST00000191249 1724 ntBASIC12.7□□□□□ -0.38
Lire1P11260 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Lire1P11260 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Lire1P11260 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lire1P11260 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Gm11478-201ENSMUST00000117851 599 ntBASIC12.69□□□□□ -0.38
Lire1P11260 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.69□□□□□ -0.38
Lire1P11260 Gm14928-201ENSMUST00000120198 477 ntBASIC12.69□□□□□ -0.38
Lire1P11260 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.69□□□□□ -0.38
Lire1P11260 Gm37748-201ENSMUST00000194379 1140 ntBASIC12.69□□□□□ -0.38
Lire1P11260 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lire1P11260 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lire1P11260 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC12.69□□□□□ -0.38
Lire1P11260 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.69□□□□□ -0.38
Lire1P11260 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lire1P11260 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lire1P11260 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lire1P11260 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms