Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Gm13461-201ENSMUST00000120980 662 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Gm9061-201ENSMUST00000182707 1006 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC15.4■□□□□ 0.06
Col1a1P11087 Gm18556-201ENSMUST00000219748 1031 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC15.4■□□□□ 0.06
Col1a1P11087 AC131330.1-201ENSMUST00000227814 1015 ntBASIC15.4■□□□□ 0.06
Col1a1P11087 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col1a1P11087 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col1a1P11087 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Gm13996-201ENSMUST00000118456 430 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Gm13736-201ENSMUST00000119272 253 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Gm15782-201ENSMUST00000121073 445 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Gm23363-201ENSMUST00000175024 79 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
Col1a1P11087 Gm37201-201ENSMUST00000191845 523 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 CT025694.1-201ENSMUST00000226188 934 ntBASIC15.39■□□□□ 0.05
Col1a1P11087 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Col1a1P11087 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col1a1P11087 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Col1a1P11087 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col1a1P11087 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
Col1a1P11087 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC15.38■□□□□ 0.05
Col1a1P11087 Gm8913-201ENSMUST00000209491 641 ntBASIC15.38■□□□□ 0.05
Col1a1P11087 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC15.38■□□□□ 0.05
Col1a1P11087 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col1a1P11087 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 AC126444.1-201ENSMUST00000225938 1768 ntBASIC15.37■□□□□ 0.05
Col1a1P11087 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Col1a1P11087 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.37■□□□□ 0.05
Col1a1P11087 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Tmed9-203ENSMUST00000224741 1450 ntBASIC15.37■□□□□ 0.05
Col1a1P11087 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Col1a1P11087 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Col1a1P11087 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms