Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Chmp6P0C0A3 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Chmp6P0C0A3 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Chmp6P0C0A3 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Gm9794-201ENSMUST00000202370 423 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 AC154239.3-201ENSMUST00000226933 674 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.53□□□□□ -0.08
Chmp6P0C0A3 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Gm9115-201ENSMUST00000120192 1348 ntBASIC14.52□□□□□ -0.08
Chmp6P0C0A3 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Chmp6P0C0A3 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm26464-201ENSMUST00000157094 305 ntBASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm44719-201ENSMUST00000206404 149 ntBASIC14.51□□□□□ -0.09
Chmp6P0C0A3 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Chmp6P0C0A3 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms