Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Cpsf3Q9QXK7 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gm4984-201ENSMUST00000115987 360 ntBASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gm6266-201ENSMUST00000203844 806 ntBASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 AC114008.2-201ENSMUST00000227699 1347 ntBASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.33□□□□□ -0.12
Cpsf3Q9QXK7 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Cdk7-205ENSMUST00000225990 1159 ntBASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.32□□□□□ -0.12
Cpsf3Q9QXK7 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms