Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Lima1Q9ERG0 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Gm13616-201ENSMUST00000120600 222 ntBASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Gm37714-201ENSMUST00000194742 342 ntBASIC13.19□□□□□ -0.3
Lima1Q9ERG0 AC154806.6-201ENSMUST00000228192 202 ntBASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lima1Q9ERG0 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Gm33320-201ENSMUST00000192232 530 ntBASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Mir497b-201ENSMUST00000093601 125 ntBASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Lima1Q9ERG0 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Gm38294-201ENSMUST00000192831 381 ntBASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lima1Q9ERG0 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms