Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Il17rd-203ENSMUST00000225146 3366 ntBASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm38671-201ENSMUST00000200573 130 ntBASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gm27839-201ENSMUST00000184242 106 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gm43433-201ENSMUST00000196573 481 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gm44799-201ENSMUST00000207639 1202 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Vps28Q9D1C8 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Gm7067-201ENSMUST00000207698 1249 ntBASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 AC110817.1-201ENSMUST00000225706 605 ntBASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Rn7sk-201ENSMUST00000083103 331 ntBASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Gm26315-201ENSMUST00000083890 321 ntBASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Vps28Q9D1C8 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 77.6 ms