Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gm4971-201ENSMUST00000205991 1108 ntBASIC13.03□□□□□ -0.32
Msh4Q99MT2 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.03□□□□□ -0.32
Msh4Q99MT2 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.03□□□□□ -0.32
Msh4Q99MT2 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msh4Q99MT2 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.02□□□□□ -0.32
Msh4Q99MT2 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Msh4Q99MT2 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Msh4Q99MT2 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Gm12341-201ENSMUST00000119724 503 ntBASIC13.02□□□□□ -0.33
Msh4Q99MT2 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Gm9908-201ENSMUST00000211534 448 ntBASIC13.02□□□□□ -0.33
Msh4Q99MT2 AC166997.1-201ENSMUST00000225122 572 ntBASIC13.02□□□□□ -0.33
Msh4Q99MT2 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Msh4Q99MT2 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.01□□□□□ -0.33
Msh4Q99MT2 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.01□□□□□ -0.33
Msh4Q99MT2 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.01□□□□□ -0.33
Msh4Q99MT2 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Gm9115-201ENSMUST00000120192 1348 ntBASIC13.01□□□□□ -0.33
Msh4Q99MT2 AC154527.2-201ENSMUST00000225256 1466 ntBASIC13.01□□□□□ -0.33
Msh4Q99MT2 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Msh4Q99MT2 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13□□□□□ -0.33
Msh4Q99MT2 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Msh4Q99MT2 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msh4Q99MT2 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Msh4Q99MT2 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms