Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm42693-201ENSMUST00000196779 631 ntBASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 AC022775.2-201ENSMUST00000227885 646 ntBASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm9823-201ENSMUST00000051212 327 ntBASIC18.74■□□□□ 0.59
Usp47Q8BY87 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Gm12846-201ENSMUST00000120431 1373 ntBASIC18.74■□□□□ 0.59
Usp47Q8BY87 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp47Q8BY87 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm38002-201ENSMUST00000193255 180 ntBASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm19184-201ENSMUST00000196798 928 ntBASIC18.73■□□□□ 0.59
Usp47Q8BY87 Gm43118-201ENSMUST00000199149 775 ntBASIC18.73■□□□□ 0.59
Usp47Q8BY87 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 n-R5s195-201ENSMUST00000082891 119 ntBASIC18.73■□□□□ 0.59
Usp47Q8BY87 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp47Q8BY87 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Gm27572-201ENSMUST00000183702 255 ntBASIC18.72■□□□□ 0.59
Usp47Q8BY87 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 AC122314.1-201ENSMUST00000223056 2239 ntBASIC18.72■□□□□ 0.59
Usp47Q8BY87 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC18.72■□□□□ 0.59
Usp47Q8BY87 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Usp47Q8BY87 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm11658-201ENSMUST00000120913 1008 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 Trav4d-2-201ENSMUST00000120914 335 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm25261-201ENSMUST00000157416 134 ntBASIC18.71■□□□□ 0.59
Usp47Q8BY87 Gm2467-201ENSMUST00000182266 1010 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms