Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ddx55Q6ZPL9 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gm2546-201ENSMUST00000182630 991 ntBASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Gm42872-201ENSMUST00000200026 1967 ntBASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ddx55Q6ZPL9 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm14130-201ENSMUST00000118417 987 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Ddx55Q6ZPL9 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Gm38058-201ENSMUST00000194323 4368 ntBASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ddx55Q6ZPL9 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ddx55Q6ZPL9 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms