Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
Usf1Q61069 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.13□□□□□ -0.47
Usf1Q61069 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Usf1Q61069 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Usf1Q61069 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC12.12□□□□□ -0.47
Usf1Q61069 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Usf1Q61069 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm8738-201ENSMUST00000172606 329 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.12□□□□□ -0.47
Usf1Q61069 Mir6979-201ENSMUST00000183927 56 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm45186-201ENSMUST00000206874 478 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 Gm18212-201ENSMUST00000211678 889 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Usf1Q61069 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Usf1Q61069 Gm9768-201ENSMUST00000206007 2861 ntBASIC12.12□□□□□ -0.47
Usf1Q61069 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Usf1Q61069 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Usf1Q61069 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Usf1Q61069 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
Usf1Q61069 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 Gm2260-201ENSMUST00000184965 657 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Gm5896-201ENSMUST00000189662 1024 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Gm37986-201ENSMUST00000193285 383 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Gm37042-201ENSMUST00000193816 581 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Gm31256-201ENSMUST00000194705 506 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.11□□□□□ -0.47
Usf1Q61069 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Gm19208-201ENSMUST00000213861 912 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Usf1Q61069 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Usf1Q61069 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.11□□□□□ -0.47
Usf1Q61069 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Usf1Q61069 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms