Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 AC150560.1-201ENSMUST00000227731 1187 ntBASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Gm26315-201ENSMUST00000083890 321 ntBASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Tmed9-203ENSMUST00000224741 1450 ntBASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Upf3bQ3ULL6 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Gm12490-201ENSMUST00000120255 560 ntBASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 AC125117.1-201ENSMUST00000228121 468 ntBASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Upf3bQ3ULL6 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm12138-201ENSMUST00000122180 951 ntBASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm2495-201ENSMUST00000191160 466 ntBASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Upf3bQ3ULL6 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Upf3bQ3ULL6 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Upf3bQ3ULL6 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Upf3bQ3ULL6 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Upf3bQ3ULL6 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Upf3bQ3ULL6 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms