Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC20.18■□□□□ 0.82
Cux1P53564 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Cux1P53564 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC20.18■□□□□ 0.82
Cux1P53564 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC20.18■□□□□ 0.82
Cux1P53564 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Cux1P53564 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 AC167013.1-201ENSMUST00000228592 202 ntBASIC20.18■□□□□ 0.82
Cux1P53564 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC20.18■□□□□ 0.82
Cux1P53564 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cux1P53564 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Gm12058-201ENSMUST00000118614 437 ntBASIC20.17■□□□□ 0.82
Cux1P53564 Gm14832-201ENSMUST00000121289 322 ntBASIC20.17■□□□□ 0.82
Cux1P53564 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cux1P53564 Gm28450-201ENSMUST00000187349 638 ntBASIC20.17■□□□□ 0.82
Cux1P53564 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC20.17■□□□□ 0.82
Cux1P53564 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC20.17■□□□□ 0.82
Cux1P53564 AC165260.3-202ENSMUST00000224550 1031 ntBASIC20.17■□□□□ 0.82
Cux1P53564 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC20.17■□□□□ 0.82
Cux1P53564 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC20.17■□□□□ 0.82
Cux1P53564 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC20.17■□□□□ 0.82
Cux1P53564 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Cux1P53564 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC20.17■□□□□ 0.82
Cux1P53564 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC20.17■□□□□ 0.82
Cux1P53564 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC20.17■□□□□ 0.82
Cux1P53564 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC20.17■□□□□ 0.82
Cux1P53564 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC20.17■□□□□ 0.82
Cux1P53564 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC20.17■□□□□ 0.82
Cux1P53564 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cux1P53564 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cux1P53564 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Cux1P53564 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Cux1P53564 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC20.16■□□□□ 0.82
Cux1P53564 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Gm43908-201ENSMUST00000205074 1472 ntBASIC20.16■□□□□ 0.82
Cux1P53564 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cux1P53564 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC20.16■□□□□ 0.82
Cux1P53564 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Cux1P53564 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm6992-201ENSMUST00000217973 1607 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Gm28386-201ENSMUST00000189147 1849 ntBASIC20.15■□□□□ 0.82
Cux1P53564 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cux1P53564 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cux1P53564 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC20.15■□□□□ 0.82
Cux1P53564 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms