Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm44806-201ENSMUST00000205574 2303 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Gm27177-202ENSMUST00000183514 2703 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 Gm6756-201ENSMUST00000180647 1620 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC10.91□□□□□ -0.66
Sdc1P18828 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Sdc1P18828 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC10.9□□□□□ -0.66
Sdc1P18828 Gm4780-202ENSMUST00000215200 2644 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Sdc1P18828 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Sdc1P18828 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.66
Sdc1P18828 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 AC159195.1-201ENSMUST00000225867 2086 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Sdc1P18828 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC10.9□□□□□ -0.66
Sdc1P18828 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Gm15483-201ENSMUST00000120338 456 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Sdc1P18828 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC10.9□□□□□ -0.66
Sdc1P18828 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 AC159196.2-201ENSMUST00000224082 1622 ntBASIC10.9□□□□□ -0.66
Sdc1P18828 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Sdc1P18828 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC10.9□□□□□ -0.66
Sdc1P18828 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC10.9□□□□□ -0.67
Sdc1P18828 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Sdc1P18828 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Sdc1P18828 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC10.9□□□□□ -0.67
Sdc1P18828 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.67
Sdc1P18828 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Sdc1P18828 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Sdc1P18828 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Sdc1P18828 Gm1995-201ENSMUST00000220838 2602 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC10.89□□□□□ -0.67
Sdc1P18828 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Sdc1P18828 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC10.89□□□□□ -0.67
Sdc1P18828 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 AC164426.2-201ENSMUST00000225993 2492 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC10.89□□□□□ -0.67
Sdc1P18828 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Sdc1P18828 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Sdc1P18828 Gm27357-201ENSMUST00000183754 135 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44357-201ENSMUST00000195897 142 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm19658-201ENSMUST00000196231 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44367-201ENSMUST00000196836 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44350-201ENSMUST00000197197 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44390-201ENSMUST00000197533 144 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44313-201ENSMUST00000198018 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44486-201ENSMUST00000198508 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44314-201ENSMUST00000199263 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44394-201ENSMUST00000199558 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44484-201ENSMUST00000199873 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44466-201ENSMUST00000200264 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Gm44359-201ENSMUST00000200671 138 ntBASIC10.89□□□□□ -0.67
Sdc1P18828 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms