Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC10.49□□□□□ -0.73
Hoxd3P09027 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Gm5912-201ENSMUST00000122282 1438 ntBASIC10.49□□□□□ -0.73
Hoxd3P09027 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC10.49□□□□□ -0.73
Hoxd3P09027 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Hoxd3P09027 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Ntrk2-209ENSMUST00000225950 2640 ntBASIC10.48□□□□□ -0.73
Hoxd3P09027 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Adam3-210ENSMUST00000171611 1202 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Rpf2-206ENSMUST00000183309 1296 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Gm27839-201ENSMUST00000184242 106 ntBASIC10.48□□□□□ -0.73
Hoxd3P09027 AC110817.1-201ENSMUST00000225706 605 ntBASIC10.48□□□□□ -0.73
Hoxd3P09027 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC10.48□□□□□ -0.73
Hoxd3P09027 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC10.48□□□□□ -0.73
Hoxd3P09027 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Gm43056-201ENSMUST00000197865 2791 ntBASIC10.48□□□□□ -0.73
Hoxd3P09027 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Hoxd3P09027 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm43980-201ENSMUST00000204899 1612 ntBASIC10.47□□□□□ -0.73
Hoxd3P09027 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC10.47□□□□□ -0.73
Hoxd3P09027 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm37648-201ENSMUST00000192072 2563 ntBASIC10.47□□□□□ -0.73
Hoxd3P09027 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Mup-ps23-201ENSMUST00000118063 630 ntBASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm13829-201ENSMUST00000119600 138 ntBASIC10.47□□□□□ -0.73
Hoxd3P09027 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC10.47□□□□□ -0.73
Hoxd3P09027 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC10.47□□□□□ -0.73
Hoxd3P09027 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm27486-201ENSMUST00000184923 80 ntBASIC10.47□□□□□ -0.73
Hoxd3P09027 1700029E06Rik-201ENSMUST00000189036 757 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Hoxd3P09027 Gm37533-201ENSMUST00000193848 545 ntBASIC10.47□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms