Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Vmn1r213-204ENSMUST00000228758 5975 ntAPPRIS P2 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm43134-201ENSMUST00000199434 1886 ntBASIC11.03□□□□□ -0.64
Hmgb3O54879 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.03□□□□□ -0.64
Hmgb3O54879 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Gm45743-201ENSMUST00000212701 2795 ntBASIC11.03□□□□□ -0.64
Hmgb3O54879 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.03□□□□□ -0.64
Hmgb3O54879 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC11.03□□□□□ -0.64
Hmgb3O54879 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hmgb3O54879 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.64
Hmgb3O54879 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC11.02□□□□□ -0.64
Hmgb3O54879 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hmgb3O54879 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Mir5131-201ENSMUST00000175426 93 ntBASIC11.02□□□□□ -0.65
Hmgb3O54879 Gm7977-201ENSMUST00000193787 748 ntBASIC11.02□□□□□ -0.65
Hmgb3O54879 Ighv8-14-201ENSMUST00000196781 358 ntBASIC11.02□□□□□ -0.65
Hmgb3O54879 Gm5864-201ENSMUST00000202263 970 ntBASIC11.02□□□□□ -0.65
Hmgb3O54879 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC11.02□□□□□ -0.65
Hmgb3O54879 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Tenm2-202ENSMUST00000102801 9908 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Olfr731-204ENSMUST00000214388 5438 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hmgb3O54879 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hmgb3O54879 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Hmgb3O54879 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hmgb3O54879 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC11.01□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 85.2 ms