Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Gm13050-201ENSMUST00000122149 1345 ntBASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cpsf3Q9QXK7 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Gm14350-201ENSMUST00000116642 640 ntBASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Gm8213-201ENSMUST00000118191 441 ntBASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cpsf3Q9QXK7 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm12390-201ENSMUST00000117897 397 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm13829-201ENSMUST00000119600 138 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm8810-201ENSMUST00000172895 754 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm27847-201ENSMUST00000183711 107 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm27375-201ENSMUST00000183799 107 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm6091-201ENSMUST00000098307 165 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cpsf3Q9QXK7 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.34□□□□□ -0.11
Cpsf3Q9QXK7 AC134335.2-201ENSMUST00000227660 440 ntBASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms