Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm14350-201ENSMUST00000116642 640 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm37922-201ENSMUST00000195596 455 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm37497-201ENSMUST00000195830 798 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm6013-201ENSMUST00000212264 699 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm10268-201ENSMUST00000085340 555 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Trim54Q9ERP3 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm18630-201ENSMUST00000222109 1397 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm37008-201ENSMUST00000195712 319 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm44064-201ENSMUST00000204964 1087 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm19309-201ENSMUST00000218295 205 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Gm10146-201ENSMUST00000072739 309 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim54Q9ERP3 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Gm26513-201ENSMUST00000181802 2489 ntBASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Gm22018-201ENSMUST00000104357 131 ntBASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Gm11618-201ENSMUST00000117946 267 ntBASIC14.46□□□□□ -0.09
Trim54Q9ERP3 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms