Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm35713-201ENSMUST00000210516 199 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Olfr1347-205ENSMUST00000220413 964 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Gm10288-201ENSMUST00000084614 537 ntBASIC17.74■□□□□ 0.43
Scn4aQ9ER60 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Scn4aQ9ER60 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Gm15725-201ENSMUST00000119947 1090 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Gm3332-201ENSMUST00000189337 928 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 AC122408.1-201ENSMUST00000218949 218 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 AC154252.2-201ENSMUST00000223593 767 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Gm4604-201ENSMUST00000025040 390 ntBASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Scn4aQ9ER60 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Gm17798-201ENSMUST00000182282 1035 ntBASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Gm43186-201ENSMUST00000198130 824 ntBASIC17.72■□□□□ 0.43
Scn4aQ9ER60 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Gm12314-201ENSMUST00000118104 538 ntBASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Scn4aQ9ER60 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Gm2875-201ENSMUST00000211333 360 ntBASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Gm7959-201ENSMUST00000221823 1078 ntBASIC17.71■□□□□ 0.43
Scn4aQ9ER60 CT030135.2-201ENSMUST00000225255 893 ntBASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn4aQ9ER60 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
Scn4aQ9ER60 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Scn4aQ9ER60 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Scn4aQ9ER60 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC17.7■□□□□ 0.42
Scn4aQ9ER60 Ighv1-86-201ENSMUST00000200562 353 ntBASIC17.7■□□□□ 0.42
Scn4aQ9ER60 AC168279.1-201ENSMUST00000214611 382 ntBASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 103.2 ms