Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 AL645783.1-201ENSMUST00000221416 1832 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm13886-201ENSMUST00000117876 1183 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm12537-201ENSMUST00000119266 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm12070-201ENSMUST00000119551 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm12671-201ENSMUST00000119978 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm13292-201ENSMUST00000120014 1000 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm12403-201ENSMUST00000121384 959 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Mir1894-201ENSMUST00000122802 81 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm10359-201ENSMUST00000180167 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm12033-201ENSMUST00000180654 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm5559-201ENSMUST00000180755 1002 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm4335-201ENSMUST00000182581 1004 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Gm37748-201ENSMUST00000194379 1140 ntBASIC13.71□□□□□ -0.21
Vps28Q9D1C8 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Vps28Q9D1C8 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Gm8131-201ENSMUST00000213783 1570 ntBASIC13.71□□□□□ -0.22
Vps28Q9D1C8 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gm7287-201ENSMUST00000205267 602 ntBASIC13.7□□□□□ -0.22
Vps28Q9D1C8 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Vps28Q9D1C8 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Vps28Q9D1C8 AC154262.2-201ENSMUST00000224310 2293 ntBASIC13.69□□□□□ -0.22
Vps28Q9D1C8 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms