Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Tmed9-203ENSMUST00000224741 1450 ntBASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Gm9816-201ENSMUST00000122292 1414 ntBASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Gm7067-201ENSMUST00000207698 1249 ntBASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Gm45331-201ENSMUST00000209868 554 ntBASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Ushbp1Q8R370 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Ushbp1Q8R370 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC15□□□□□ -0.01
Ushbp1Q8R370 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm17330-201ENSMUST00000221047 165 ntBASIC15□□□□□ -0.01
Ushbp1Q8R370 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC15□□□□□ -0.01
Ushbp1Q8R370 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Ushbp1Q8R370 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gm24447-201ENSMUST00000083977 338 ntBASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ushbp1Q8R370 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ushbp1Q8R370 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms