Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vps54Q5SPW0 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm15544-201ENSMUST00000118776 1531 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Grk6-205ENSMUST00000224653 2976 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 AC114008.2-201ENSMUST00000227699 1347 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm14127-201ENSMUST00000117906 678 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm22331-201ENSMUST00000158066 136 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 AC134335.2-201ENSMUST00000227660 440 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm25857-201ENSMUST00000082788 129 ntBASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Vps54Q5SPW0 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm10327-201ENSMUST00000105222 1002 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm12203-201ENSMUST00000118235 598 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm11425-201ENSMUST00000119608 498 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm12209-201ENSMUST00000120089 596 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm42442-201ENSMUST00000197951 1133 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 CT573086.1-201ENSMUST00000227202 1074 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Gm9396-201ENSMUST00000076703 567 ntBASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Vps54Q5SPW0 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Gm8213-201ENSMUST00000118191 441 ntBASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Gm24644-201ENSMUST00000157114 139 ntBASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Vps54Q5SPW0 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Vps54Q5SPW0 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms