Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm22133-201ENSMUST00000102082 109 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm13286-201ENSMUST00000117750 537 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Gng5-ps-201ENSMUST00000120931 205 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col17a1Q07563 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm42433-201ENSMUST00000196806 940 ntBASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC20.05■□□□□ 0.8
Col17a1Q07563 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Col17a1Q07563 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm26013-201ENSMUST00000104404 119 ntBASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm25063-201ENSMUST00000104666 94 ntBASIC20.04■□□□□ 0.8
Col17a1Q07563 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm8531-201ENSMUST00000188319 893 ntBASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm17877-201ENSMUST00000192578 814 ntBASIC20.04■□□□□ 0.8
Col17a1Q07563 Gm5599-201ENSMUST00000209602 788 ntBASIC20.04■□□□□ 0.8
Col17a1Q07563 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Col17a1Q07563 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col17a1Q07563 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC20.03■□□□□ 0.8
Col17a1Q07563 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.03■□□□□ 0.8
Col17a1Q07563 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Gm44056-201ENSMUST00000204623 1427 ntBASIC20.03■□□□□ 0.8
Col17a1Q07563 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 CT010478.1-201ENSMUST00000220747 2787 ntBASIC20.03■□□□□ 0.8
Col17a1Q07563 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Col17a1Q07563 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
Col17a1Q07563 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC20.03■□□□□ 0.8
Col17a1Q07563 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC20.03■□□□□ 0.8
Col17a1Q07563 Gm38297-201ENSMUST00000195122 1057 ntBASIC20.03■□□□□ 0.8
Col17a1Q07563 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Col17a1Q07563 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col17a1Q07563 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC20.02■□□□□ 0.8
Col17a1Q07563 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Rprl1-201ENSMUST00000158050 327 ntBASIC20.02■□□□□ 0.8
Col17a1Q07563 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Mir6973a-201ENSMUST00000183646 78 ntBASIC20.02■□□□□ 0.8
Col17a1Q07563 Gm29763-201ENSMUST00000205306 616 ntBASIC20.02■□□□□ 0.8
Col17a1Q07563 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC20.02■□□□□ 0.8
Col17a1Q07563 Olfr692-202ENSMUST00000217827 1126 ntBASIC20.02■□□□□ 0.8
Col17a1Q07563 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col17a1Q07563 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Col17a1Q07563 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col17a1Q07563 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC20.02■□□□□ 0.79
Col17a1Q07563 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Col17a1Q07563 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col17a1Q07563 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Gm43205-201ENSMUST00000198622 1968 ntBASIC20.01■□□□□ 0.79
Col17a1Q07563 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Gm15003-201ENSMUST00000118884 446 ntBASIC20.01■□□□□ 0.79
Col17a1Q07563 Gm11502-201ENSMUST00000120917 1211 ntBASIC20.01■□□□□ 0.79
Col17a1Q07563 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC20.01■□□□□ 0.79
Col17a1Q07563 Gm45594-201ENSMUST00000211717 241 ntBASIC20.01■□□□□ 0.79
Col17a1Q07563 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Col17a1Q07563 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col17a1Q07563 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Col17a1Q07563 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC20■□□□□ 0.79
Col17a1Q07563 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col17a1Q07563 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col17a1Q07563 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col17a1Q07563 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms