Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Clec12b-202ENSMUST00000112082 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Mir1192-201ENSMUST00000116976 121 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm11531-201ENSMUST00000117614 555 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm15937-201ENSMUST00000120727 1235 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm13123-201ENSMUST00000122173 492 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm42696-201ENSMUST00000199859 1142 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 AC073947.2-201ENSMUST00000215888 1130 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 AC122539.3-201ENSMUST00000218355 1431 ntBASIC13.19□□□□□ -0.3
Col9a1Q05722 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Pbld1-202ENSMUST00000178684 2404 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col9a1Q05722 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col9a1Q05722 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm11510-201ENSMUST00000120278 347 ntBASIC13.18□□□□□ -0.3
Col9a1Q05722 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm8885-201ENSMUST00000189382 598 ntBASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm37866-201ENSMUST00000191950 696 ntBASIC13.18□□□□□ -0.3
Col9a1Q05722 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 CT025526.1-201ENSMUST00000217327 267 ntBASIC13.18□□□□□ -0.3
Col9a1Q05722 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col9a1Q05722 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.18□□□□□ -0.3
Col9a1Q05722 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col9a1Q05722 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col9a1Q05722 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms