Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Mir686-201ENSMUST00000102174 109 ntBASIC11.55□□□□□ -0.56
Nkx3-1P97436 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gm26927-201ENSMUST00000182385 965 ntBASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gm27516-201ENSMUST00000184237 98 ntBASIC11.55□□□□□ -0.56
Nkx3-1P97436 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.55□□□□□ -0.56
Nkx3-1P97436 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.55□□□□□ -0.56
Nkx3-1P97436 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Snora73a-201ENSMUST00000082453 205 ntBASIC11.55□□□□□ -0.56
Nkx3-1P97436 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Nkx3-1P97436 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Nkx3-1P97436 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm27501-201ENSMUST00000183599 107 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm38266-201ENSMUST00000194931 421 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm42627-201ENSMUST00000197347 224 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm43822-201ENSMUST00000200285 476 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm45684-201ENSMUST00000210244 1571 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Gm18630-201ENSMUST00000222109 1397 ntBASIC11.54□□□□□ -0.56
Nkx3-1P97436 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC11.54□□□□□ -0.56
Nkx3-1P97436 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Gm14350-201ENSMUST00000116642 640 ntBASIC11.53□□□□□ -0.56
Nkx3-1P97436 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.53□□□□□ -0.56
Nkx3-1P97436 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Mir8109-201ENSMUST00000184375 117 ntBASIC11.53□□□□□ -0.56
Nkx3-1P97436 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Nkx3-1P97436 Gm44064-201ENSMUST00000204964 1087 ntBASIC11.53□□□□□ -0.56
Nkx3-1P97436 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms