Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col18a1P39061 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col18a1P39061 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col18a1P39061 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
Col18a1P39061 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC17.29■□□□□ 0.36
Col18a1P39061 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC17.29■□□□□ 0.36
Col18a1P39061 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC17.29■□□□□ 0.36
Col18a1P39061 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC17.29■□□□□ 0.36
Col18a1P39061 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC17.29■□□□□ 0.36
Col18a1P39061 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 AC171241.1-201ENSMUST00000228144 1166 ntBASIC17.29■□□□□ 0.36
Col18a1P39061 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC17.29■□□□□ 0.36
Col18a1P39061 Gm8325-201ENSMUST00000099086 453 ntBASIC17.29■□□□□ 0.36
Col18a1P39061 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 AC123619.2-202ENSMUST00000225097 1568 ntBASIC17.29■□□□□ 0.36
Col18a1P39061 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.29■□□□□ 0.36
Col18a1P39061 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col18a1P39061 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.29■□□□□ 0.36
Col18a1P39061 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col18a1P39061 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Col18a1P39061 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Col18a1P39061 Mir1956-201ENSMUST00000157748 65 ntBASIC17.28■□□□□ 0.36
Col18a1P39061 Gm25072-201ENSMUST00000175233 235 ntBASIC17.28■□□□□ 0.36
Col18a1P39061 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC17.28■□□□□ 0.36
Col18a1P39061 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col18a1P39061 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Col18a1P39061 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Col18a1P39061 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Col18a1P39061 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC17.28■□□□□ 0.36
Col18a1P39061 Gm6397-201ENSMUST00000161973 1069 ntBASIC17.28■□□□□ 0.36
Col18a1P39061 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC17.28■□□□□ 0.36
Col18a1P39061 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC17.28■□□□□ 0.36
Col18a1P39061 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col18a1P39061 Gm5733-201ENSMUST00000190232 939 ntBASIC17.28■□□□□ 0.36
Col18a1P39061 Gm7551-201ENSMUST00000089593 1074 ntBASIC17.28■□□□□ 0.36
Col18a1P39061 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col18a1P39061 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col18a1P39061 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col18a1P39061 AC158355.1-201ENSMUST00000215895 1705 ntBASIC17.27■□□□□ 0.36
Col18a1P39061 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col18a1P39061 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col18a1P39061 Gm3765-201ENSMUST00000130985 1447 ntBASIC17.27■□□□□ 0.36
Col18a1P39061 AC130671.2-201ENSMUST00000227224 1621 ntBASIC17.27■□□□□ 0.35
Col18a1P39061 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
Col18a1P39061 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC17.27■□□□□ 0.35
Col18a1P39061 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC17.27■□□□□ 0.35
Col18a1P39061 Gm17831-201ENSMUST00000205579 900 ntBASIC17.27■□□□□ 0.35
Col18a1P39061 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Gm9996-201ENSMUST00000070359 913 ntBASIC17.27■□□□□ 0.35
Col18a1P39061 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Col18a1P39061 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC17.27■□□□□ 0.35
Col18a1P39061 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.27■□□□□ 0.35
Col18a1P39061 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col18a1P39061 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Gm22133-201ENSMUST00000102082 109 ntBASIC17.26■□□□□ 0.35
Col18a1P39061 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC17.26■□□□□ 0.35
Col18a1P39061 Gm23085-201ENSMUST00000157849 293 ntBASIC17.26■□□□□ 0.35
Col18a1P39061 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col18a1P39061 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC17.26■□□□□ 0.35
Col18a1P39061 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms