Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Lima1Q9ERG0 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Gm15653-201ENSMUST00000119247 907 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Shd-206ENSMUST00000225145 998 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Gm14452-201ENSMUST00000118680 1632 ntBASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Lima1Q9ERG0 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm37277-201ENSMUST00000194052 1111 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ighv1-25-201ENSMUST00000195638 345 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm6916-202ENSMUST00000205523 195 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Gm18027-201ENSMUST00000218947 619 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Lima1Q9ERG0 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Lima1Q9ERG0 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms