Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Rubie-203ENSMUST00000227803 2430 ntBASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gm7488-201ENSMUST00000117148 684 ntBASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ddx56Q9D0R4 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Mir874-201ENSMUST00000104769 76 ntBASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Gm12341-201ENSMUST00000119724 503 ntBASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Gm29608-201ENSMUST00000190444 463 ntBASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Gm42550-201ENSMUST00000201553 960 ntBASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ddx56Q9D0R4 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ddx56Q9D0R4 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Ddx56Q9D0R4 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Ddx56Q9D0R4 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Ddx56Q9D0R4 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ddx56Q9D0R4 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms