Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm12390-201ENSMUST00000117897 397 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm6244-201ENSMUST00000178732 841 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm18307-201ENSMUST00000206864 949 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm37795-201ENSMUST00000194216 2459 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.03■□□□□ -0
Ushbp1Q8R370 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.03■□□□□ -0
Ushbp1Q8R370 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ushbp1Q8R370 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
Ushbp1Q8R370 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.02■□□□□ -0
Ushbp1Q8R370 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC15.02■□□□□ -0
Ushbp1Q8R370 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Ushbp1Q8R370 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC15.02■□□□□ -0
Ushbp1Q8R370 Gm14730-201ENSMUST00000122378 1045 ntBASIC15.02■□□□□ -0
Ushbp1Q8R370 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC15.02■□□□□ -0
Ushbp1Q8R370 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC15.02■□□□□ -0
Ushbp1Q8R370 Gm7498-201ENSMUST00000203282 1084 ntBASIC15.02■□□□□ -0
Ushbp1Q8R370 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC15.02■□□□□ -0
Ushbp1Q8R370 AC156560.2-201ENSMUST00000221232 264 ntBASIC15.02■□□□□ -0
Ushbp1Q8R370 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC15.02■□□□□ -0
Ushbp1Q8R370 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ushbp1Q8R370 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms