Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Cpsf4Q8BQZ5 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Gm4804-201ENSMUST00000182234 999 ntBASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Cpsf4Q8BQZ5 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Gm12500-202ENSMUST00000186471 2428 ntBASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Mir698-201ENSMUST00000102164 109 ntBASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Gm14928-201ENSMUST00000120198 477 ntBASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 AC139580.1-202ENSMUST00000223574 928 ntBASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cpsf4Q8BQZ5 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf4Q8BQZ5 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cpsf4Q8BQZ5 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms