Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Trim41Q5NCC3 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Trim41Q5NCC3 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Gm25927-201ENSMUST00000175058 117 ntBASIC23.2■■□□□ 1.3
Trim41Q5NCC3 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 CT025551.1-201ENSMUST00000223996 692 ntBASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Trim41Q5NCC3 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Mir686-201ENSMUST00000102174 109 ntBASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Gm2231-201ENSMUST00000125661 612 ntBASIC23.19■■□□□ 1.3
Trim41Q5NCC3 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Gm4607-201ENSMUST00000206649 577 ntBASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim41Q5NCC3 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Gm42872-201ENSMUST00000200026 1967 ntBASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Gm14130-201ENSMUST00000118417 987 ntBASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC23.18■■□□□ 1.3
Trim41Q5NCC3 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Gm16202-201ENSMUST00000117532 544 ntBASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC23.17■■□□□ 1.3
Trim41Q5NCC3 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 AC134254.1-201ENSMUST00000221362 167 ntBASIC23.16■■□□□ 1.3
Trim41Q5NCC3 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim41Q5NCC3 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim41Q5NCC3 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim41Q5NCC3 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms