Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Hist1h2al-201ENSMUST00000091708 339 ntBASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col28a1Q2UY11 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gm45751-201ENSMUST00000210185 1573 ntBASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 AC124751.1-201ENSMUST00000222716 1408 ntBASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col28a1Q2UY11 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Gm13015-201ENSMUST00000118674 204 ntBASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Gm29541-201ENSMUST00000191351 678 ntBASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.03□□□□□ -0.32
Col28a1Q2UY11 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col28a1Q2UY11 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.02□□□□□ -0.32
Col28a1Q2UY11 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col28a1Q2UY11 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms