Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 AC116589.4-201ENSMUST00000222390 216 ntBASIC13.22□□□□□ -0.29
Col9a1Q05722 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC13.22□□□□□ -0.29
Col9a1Q05722 Gm16372-201ENSMUST00000073088 450 ntBASIC13.22□□□□□ -0.29
Col9a1Q05722 Gm25201-201ENSMUST00000083093 170 ntBASIC13.22□□□□□ -0.29
Col9a1Q05722 Spink11-201ENSMUST00000097587 746 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col9a1Q05722 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC13.22□□□□□ -0.29
Col9a1Q05722 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Col9a1Q05722 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Col9a1Q05722 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Col9a1Q05722 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Timm21-201ENSMUST00000025547 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm7489-201ENSMUST00000100666 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm14034-201ENSMUST00000120147 551 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Cep97-204ENSMUST00000121129 989 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm15547-201ENSMUST00000122152 333 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm4862-201ENSMUST00000170405 438 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm16434-202ENSMUST00000177712 618 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm6676-202ENSMUST00000178376 618 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm44353-201ENSMUST00000200618 138 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 AC134439.1-201ENSMUST00000220923 600 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 CT009713.8-202ENSMUST00000224732 385 ntBASIC13.21□□□□□ -0.29
Col9a1Q05722 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Col9a1Q05722 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Col9a1Q05722 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC13.21□□□□□ -0.3
Col9a1Q05722 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC13.21□□□□□ -0.3
Col9a1Q05722 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col9a1Q05722 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm15544-201ENSMUST00000118776 1531 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm13045-201ENSMUST00000119019 712 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm14040-201ENSMUST00000139058 697 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Vmn1r5-201ENSMUST00000164307 1056 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm42511-201ENSMUST00000196160 234 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 4930595O18Rik-201ENSMUST00000205099 607 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm19091-201ENSMUST00000208120 978 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm45433-201ENSMUST00000209386 247 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Defb12-201ENSMUST00000062113 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col9a1Q05722 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Gm22005-201ENSMUST00000082795 141 ntBASIC13.2□□□□□ -0.3
Col9a1Q05722 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col9a1Q05722 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms