Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC10.95□□□□□ -0.66
Sdc1P18828 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC10.95□□□□□ -0.66
Sdc1P18828 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC10.95□□□□□ -0.66
Sdc1P18828 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC10.95□□□□□ -0.66
Sdc1P18828 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC10.95□□□□□ -0.66
Sdc1P18828 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 AC121598.1-201ENSMUST00000228224 1019 ntBASIC10.95□□□□□ -0.66
Sdc1P18828 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
Sdc1P18828 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC10.95□□□□□ -0.66
Sdc1P18828 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Gm37391-201ENSMUST00000194891 2318 ntBASIC10.95□□□□□ -0.66
Sdc1P18828 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Sdc1P18828 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
Sdc1P18828 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC10.94□□□□□ -0.66
Sdc1P18828 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC10.94□□□□□ -0.66
Sdc1P18828 AC093022.5-201ENSMUST00000226841 1079 ntBASIC10.94□□□□□ -0.66
Sdc1P18828 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm43417-201ENSMUST00000201586 5207 ntBASIC10.94□□□□□ -0.66
Sdc1P18828 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Sdc1P18828 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm43321-201ENSMUST00000198897 2409 ntBASIC10.94□□□□□ -0.66
Sdc1P18828 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Sdc1P18828 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC10.93□□□□□ -0.66
Sdc1P18828 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC10.93□□□□□ -0.66
Sdc1P18828 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC10.93□□□□□ -0.66
Sdc1P18828 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Sdc1P18828 Gm16198-201ENSMUST00000118766 670 ntBASIC10.93□□□□□ -0.66
Sdc1P18828 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms