Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Gm5100-201ENSMUST00000195631 589 ntBASIC17.8■□□□□ 0.44
Scn4aQ9ER60 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Scn4aQ9ER60 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm13022-201ENSMUST00000121181 285 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm44953-201ENSMUST00000208745 1286 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm7395-201ENSMUST00000216059 1045 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm12291-201ENSMUST00000121627 311 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Scn4aQ9ER60 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm44645-201ENSMUST00000205492 1653 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm22133-201ENSMUST00000102082 109 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm11989-201ENSMUST00000117240 672 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm14314-201ENSMUST00000118225 1015 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm11362-201ENSMUST00000118838 850 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 AC153962.2-201ENSMUST00000219417 550 ntBASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Scn4aQ9ER60 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Scn4aQ9ER60 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms