Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm28631-201ENSMUST00000190740 334 ntBASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx56Q9D0R4 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm43134-201ENSMUST00000199434 1886 ntBASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx56Q9D0R4 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm2423-201ENSMUST00000074863 733 ntBASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Gm44065-201ENSMUST00000203184 3527 ntBASIC14.11□□□□□ -0.15
Ddx56Q9D0R4 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms