Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm6912-201ENSMUST00000117218 544 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm15240-201ENSMUST00000118156 720 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm13385-201ENSMUST00000121089 220 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm11424-201ENSMUST00000121929 829 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm15823-201ENSMUST00000064305 670 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Mir497b-201ENSMUST00000093601 125 ntBASIC13.09□□□□□ -0.31
Msh4Q99MT2 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Msh4Q99MT2 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Msh4Q99MT2 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Msh4Q99MT2 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Msh4Q99MT2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Msh4Q99MT2 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Msh4Q99MT2 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Ldha-ps-201ENSMUST00000119390 995 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm11557-201ENSMUST00000120200 1008 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm23984-201ENSMUST00000157139 203 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm8927-201ENSMUST00000181978 981 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm5354-201ENSMUST00000182417 973 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm8515-201ENSMUST00000194852 576 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm5279-201ENSMUST00000199575 745 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm18905-201ENSMUST00000205454 928 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm18624-201ENSMUST00000220966 658 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm3222-201ENSMUST00000071282 990 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.08□□□□□ -0.32
Msh4Q99MT2 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Msh4Q99MT2 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms