Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Rpa1Q8VEE4 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm6222-201ENSMUST00000120787 396 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm8000-201ENSMUST00000188378 592 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 AC149588.3-201ENSMUST00000227515 150 ntBASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Rpa1Q8VEE4 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Mir497b-201ENSMUST00000093601 125 ntBASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Rpa1Q8VEE4 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Gm14452-201ENSMUST00000118680 1632 ntBASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Mir698-201ENSMUST00000102164 109 ntBASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Gm2810-201ENSMUST00000118681 990 ntBASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Rpa1Q8VEE4 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms