Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm9431-201ENSMUST00000119765 1051 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm6161-201ENSMUST00000121942 1102 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm6254-201ENSMUST00000168178 1072 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm6153-201ENSMUST00000172004 1058 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm29396-201ENSMUST00000185659 716 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm5641-202ENSMUST00000198699 1080 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm3961-201ENSMUST00000204425 994 ntBASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Usp40Q8BWR4 Gm21451-201ENSMUST00000111062 2775 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm13342-201ENSMUST00000121055 207 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm3890-201ENSMUST00000182416 207 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm43758-201ENSMUST00000199500 367 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm7783-201ENSMUST00000204795 781 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm4768-201ENSMUST00000206199 686 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Gm6334-201ENSMUST00000207083 228 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Cts7-204ENSMUST00000225321 1257 ntBASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC18.31■□□□□ 0.52
Usp40Q8BWR4 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm13350-201ENSMUST00000120519 479 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm12539-201ENSMUST00000121549 1098 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm10608-202ENSMUST00000213924 676 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm8227-201ENSMUST00000223306 571 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm24526-201ENSMUST00000082921 158 ntBASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Usp40Q8BWR4 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Gm37042-201ENSMUST00000193816 581 ntBASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Gm45865-201ENSMUST00000211815 945 ntBASIC18.29■□□□□ 0.52
Usp40Q8BWR4 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms