Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.55■□□□□ 0.08
Nup98Q6PFD9 Gm12012-201ENSMUST00000118857 1066 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm6652-201ENSMUST00000186414 1070 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm45186-201ENSMUST00000206874 478 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 AC167013.1-201ENSMUST00000228592 202 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Mir877-201ENSMUST00000104738 85 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm13736-201ENSMUST00000119272 253 ntBASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Nup98Q6PFD9 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm24830-201ENSMUST00000102024 166 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm25890-201ENSMUST00000177643 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Rnu1b2-201ENSMUST00000178073 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Rnu1b1-201ENSMUST00000178250 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm22614-201ENSMUST00000178300 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm5597-201ENSMUST00000182353 1193 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Mir7070-201ENSMUST00000183657 86 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm22042-201ENSMUST00000082989 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm26232-201ENSMUST00000083360 166 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm24136-201ENSMUST00000083374 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Rnu1b6-201ENSMUST00000083839 166 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm26110-201ENSMUST00000083971 165 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Gm7993-201ENSMUST00000200970 1384 ntBASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Nup98Q6PFD9 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Gm2383-201ENSMUST00000181461 807 ntBASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Nup98Q6PFD9 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nup98Q6PFD9 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nup98Q6PFD9 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Nup98Q6PFD9 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms