Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC16.49■□□□□ 0.23
Trim27Q62158 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
Trim27Q62158 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.49■□□□□ 0.23
Trim27Q62158 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim27Q62158 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Trim27Q62158 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Gm44401-201ENSMUST00000204462 2375 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 AC096628.2-201ENSMUST00000225443 1413 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Gm6447-201ENSMUST00000118905 835 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.48■□□□□ 0.23
Trim27Q62158 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Gm2495-201ENSMUST00000191160 466 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 Gm6983-201ENSMUST00000214912 628 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
Trim27Q62158 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trim27Q62158 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim27Q62158 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trim27Q62158 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim27Q62158 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim27Q62158 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trim27Q62158 Gm43364-201ENSMUST00000196046 3274 ntBASIC16.48■□□□□ 0.23
Trim27Q62158 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim27Q62158 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trim27Q62158 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Gm6161-201ENSMUST00000121942 1102 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.47■□□□□ 0.23
Trim27Q62158 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim27Q62158 Gm6254-201ENSMUST00000168178 1072 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 Gm6153-201ENSMUST00000172004 1058 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trim27Q62158 Gm5641-202ENSMUST00000198699 1080 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC16.47■□□□□ 0.23
Trim27Q62158 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim27Q62158 CT573086.1-201ENSMUST00000227202 1074 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 AC134335.2-201ENSMUST00000227660 440 ntBASIC16.47■□□□□ 0.23
Trim27Q62158 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim27Q62158 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim27Q62158 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim27Q62158 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.46■□□□□ 0.23
Trim27Q62158 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC16.46■□□□□ 0.23
Trim27Q62158 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.46■□□□□ 0.23
Trim27Q62158 AC159006.1-201ENSMUST00000226396 258 ntBASIC16.46■□□□□ 0.23
Trim27Q62158 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trim27Q62158 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Trim27Q62158 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.46■□□□□ 0.23
Trim27Q62158 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim27Q62158 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC16.46■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 227 ms