Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm10268-201ENSMUST00000085340 555 ntBASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc88aQ5SNZ0 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm24255-201ENSMUST00000104481 128 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm16379-201ENSMUST00000161469 348 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm8762-201ENSMUST00000193486 339 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 AC173210.1-201ENSMUST00000222341 1131 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccdc88aQ5SNZ0 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm4986-201ENSMUST00000119731 549 ntBASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Mir5120-201ENSMUST00000175020 78 ntBASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 n-R5s195-201ENSMUST00000082891 119 ntBASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Ccdc88aQ5SNZ0 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm11978-201ENSMUST00000122315 466 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 B9d1os-201ENSMUST00000137010 674 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Ccdc88aQ5SNZ0 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Gm2824-203ENSMUST00000226189 1228 ntBASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccdc88aQ5SNZ0 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms